pytometry.tools.normalize_arcsinh

pytometry.tools.normalize_arcsinh(adata, cofactor=5, inplace=True)

Inverse hyperbolic sine transformation.

Parameters

• adata – AnnData object

• cofactor (float or pandas.Series) – all values are divided by this factor before arcsinh transformation recommended value for cyTOF data is 5 and for flow data 150.

• inplace (bool, optional) – Return a copy instead of writing to adata. Defaults to True.

Returns

Depending on inplace, returns or updates adata in the following field adata.X is then a normalised adata object

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