Pytometry: Flow & mass cytometry analytics#
This package provides efficient and scalable handling of flow and mass cytometry data analysis. It provides
the functionality to read in flow data in the fcs file format as anndata objects
flow and mass cytometry specific preprocessing tools
access to the entire scanpy workflow functionality
GPU support through rapids
Follow https://twitter.com/marenbuettner for updates.
For the code enthusiasts: Find our code base on Github.
Installation#
You can install pytometry via pip from PyPI:
pip install pytometry
or from GitHub:
pip install git+https://github.com/buettnerlab/pytometry.git
Updates#
May 3rd 2023: New release 0.1.5 with FlowSOM clustering and autologicle normalization.
August 28th 2023: New release with various fixes and improvements.
October 12th 2022: First public release announcement on Twitter